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时间 期刊名 IF 文章标题 方法 物种 来源
1 2015 Lancet 98.4 HMG-coenzyme A reductase inhibition, type 2 diabetes, and bodyweight: evidence from genetic analysis and randomised trials 遗传学研究、他汀类药物试验Meta 分析 doi:10.1016/S0140- 6736(14)61183-1
2 2022 Nature 50.5 Rolling back of human pluripotent stem cells to an 8-cell embryo-like stage RRBS、微量WGBS
scATAC-seq、 SMART-seq2
人体胚胎细胞 https://doi.org/10.1038/s41586- 022-04625-0
3 2023 Cell 45.5 Live birth of chimeric monkey with high contribution from embryonic stem cells 微量WGBS、SMART-seq2 食蟹猴 DOI:10.1016/j.cell.2023.10.005
4 2009 Science 44.7 Complete resequencing of 40 genomes reveals domestication events and genes in silkworm (Bombyx) 全基因组重测序 家蚕 doi: 10.1126/science.1176620
5 2017 Cell Res 28.1 De novo DNA methylation during monkey pre-implantation embryogenesis 微量WGBS 恒河猴,胚胎细胞 DOI:10.1038/cr.2017.25
6 2014 BLOOD 21 Inherited bone marrow failure associated with germline mutation of ACD, the gene encoding telomere protein TPP1 WES、孟德尔遗传分析、 qPCR、qRT-PCR、ChIP 人,外周血 DOI:10.1182/blood-2014-08- 596445
7 2025 Cell Stem Cell 20 Modeling early gastrulation in human blastoids with DNA methylation patterns of natural blastocysts RRBS 人体胚胎细胞 doi:10.1016/j.stem.2024.12.010
8 2024 Nucleic Acids Res 16.6 Programmable RNA 5-methylcytosine (m5C) modification of cellular RNAs by dCasRx conjugated methyltransferase and demethylase RNA-BS 细胞 doi.org/10.1093/nar/gkae110
9 2023 Nucleic Acids Res 16.6 A meet-up of acetyl phosphate and c-di-GMP modulates BldD activity for development and antibiotic production ChIP-seq 细菌 doi:10.1093/nar/gkad494
10 2022 Nucleic Acids Res 16.6 Schlafen 5 suppresses human immunodeficiency virus type 1 transcription by commandeering cellular epigenetic machinery ChIP-seq 小鼠,细胞 doi:10.1093/nar/gkac489
11 2024 Nat Commun 14.7 Human papillomavirus-encoded circular RNA circE7 promotes immune evasion in head and neck squamous cell carcinoma ChIP-seq 人、小鼠头颈鳞癌细胞 DOI:10.1038/s41467-024-52981-4
12 2024 Nat Commun 14.7
Non-invasive modulation of meningeal lymphatics
ameliorates ageing and Alzheimer's disease-associated pathology and cognition in mice
Smart-seq2 小鼠脑膜组织 doi: 10.1038/s41467-024- 45656-7
13 2024 Nat Commun 14.7 Allosteric regulation by c-di-AMP modulates a complete N-acetylglucosamine signaling cascade in Saccharopolyspora erythraea EMSA 、ChIP-seq、qRT- PCR 细菌 doi: 10.1038/s41467-024- 48063-0
14 2014 Nat Commun 14.7 The locust genome provides insight into swarm formation and long distance flight RRBS、RNA-seq、基因组 蝗虫 DOI:10.1038/ncomms3957
15 2014 Nat Commun 14.7 Differential methylation of the TRPA1 promoter in pain sensitivity MeDIP-seq、450K、焦磷酸测序 人,全血 DOI:10.1038/ncomms3978
16 2014 Nat Commun 14.7 An integrated epigenomic analysis for type 2 diabetes susceptibility loci in monozygotic twins MeDIP-seq、450K、代谢组 人,全血 DOI:10.1038/ncomms6719
17 2018 Nat Commun 14.7 Obligatory and facilitative allelic variation in the DNA methylome within common disease-associated loci. MeDIP-seq、GWAS分析、 450K 人,全血 DOI:10.1038/s41467-017- 01586-1
18 2020 Nat Commun 14.7 Transcriptomic and open chromatin atlas of high-resolution anatomical regions in the rhesus macaque brain ATAC-seq、RNA-seq 恒河猴,脑组织 DOI:10.1038/s41467-020- 14368-z
19 2021 Nat Commun 14.7 The genomic loci of specific human tRNA genes exhibit ageing-related DNA hypermethylation MeDIP-seq、Target-BS、 RRBS、450K DOI:10.1038/s41467-021- 22639-6
20 2020 Nat Commun 14.7 ARTICLE JMJD3 acts in tandem with KLF4 to facilitate reprogramming to pluripotency RNA-seq、ATAC-seq 、
ChIP-seq
小鼠,大脑 DOI:10.1038/s41467-020- 18900-z
21 2024 Advanced Science 14.3 Metabolic Recoding of NSUN2-Mediated m5C Modification Promotes the Progression of Colorectal Cancer via the NSUN2/YBX1/m5C-ENO1 Positive Feedback Loop RNA-BS、RNA-seq 人胚胎肾HEK
293T细胞
doi: 10.1002/advs.202309840
22 2024  cell death & differentiation 13.7 The IDH1-R132H mutation aggravates cisplatin-induced acute kidney injury by promoting ferroptosis through disrupting NDUFA1 and FSP1 interaction RRBS、RNA-seq 小鼠 细胞 doi:10.1038/s41418-024-01381-8
23 2022 J Clin Invest 13.3 Iron-dependent epigenetic modulation promotes pathogenic T cell differentiation in lupus MeDIP-Seq 、 hMeDIP-Seq 小鼠 DOI:10.1172/JCI152345
24 2024 Chemical
Engineering Journal
13.3
Novel strategy to understand the aerobic deterioration of
corn silage and the influence of Neolamarckia cadamba essential oil by multi-omics analysis
宏基因组测序、宏转录组 肠道内容物 DOI:10.1016/j.cej.2024.148715
25 2018 Cell discovery 13 DNA methylation reprogramming of functional elements during mammalian embryonic development MethylC-seq、RNA-seq 人,胚胎 DOI:10.1038/s41421-018-0039- 9
26 2023 J Hazard Mater 12.2 Effects of thiacloprid exposure on microbiota-gut-liver axis: Multiomics mechanistic analysis in Japanese quails 微生物组16S rRNA 测序、
代谢组LC-MS测序、转录组RNA-seq等
日本鹌鹑 doi:10.1016/j.jhazmat.2022.130082
27 2020 Sci Adv 11.7 β-Catenin safeguards the ground state of mousepluripotency by strengthening the robustness of the transcriptional apparatus ChIP-qPCR、GRO-seq、 ATAC-seq、RNA-seq 人胚胎肾细胞、小鼠 DOI:10.1126/sciadv.aba1593
28 2022 GENOM
PROTEOM BIOINF
11.5 Protein Lactylation and Metabolic Regulation of the Zoonotic Parasite Toxoplasma gondii ChIP-seq 弓形虫 doi: 10.1016/j.gpb.2022.09.010
29 2025 J Exp Clin Cancer Res 11.4 NONO regulates m5C modification and alternative splicing of PTEN mRNAs to drive gastric cancer progression RNA-BS 人 细胞 DOI:10.1186/s13046-024-03260-z
30 2021 J Allergy Clin Immunol 11.4 Thymic stromal lymphopoietin epigenetically upregulates Fc receptor γ subunit–related receptors on antigen-presenting cells and induces TH2/TH17 polarization through dectin-2 oxBS 人外周血细胞 DOI:10.1016/j.jaci.2019.06.011
31 2016 BRAIN 10.6 CSF1R mosaicism in a family with hereditary diffuse leukoencephalopathy with spheroids 外显子测序、Sanger测序
、扩增子测序
DOI:10.1093/brain/aww066
32 2017 Genome Med 10.4 DNA methylation changes at infertility genes in newborn twins conceived by in vitro fertilisation MeDIP-seq 人双胞
胎,脐带血
DOI:10.1186/s13073-017-0413- 5
33 2022 Environment Internation 10.3 Genome-wide alternation and effect of DNA methylation in the impairments of steroidogenesis and spermatogenesis after PM2.5 exposure WGBS、RNA-seq、 Western Blot 小鼠,组织 DOI:10.1016/j.envint.2022.1075 44
34 2012 GENOME BIOL 10.1 Differential DNA methylation in discrete developmental stages of the parasitic nematode Trichinella spiralis MethylC-seq、 RNA-seq、qPCR 大鼠,寄
生虫旋毛虫
DOI:10.1186/gb-2012-13-10- r100
35 2014 GENOME BIOL 10.1
Integrated analyses of DNA methylation and
hydroxymethylation reveal tumor suppressive roles of ECM1, ATF5, and EOMES in human hepatocellular carcinoma
HSMT-Seq,RNA-seq 人,HCC组织 DOI:10.1186/s13059-014-0533- 9
36 2016 GENOME BIOL 10.1 Novel regional age-associated DNA methylation changes within human common disease-associated loci MeDIP-seq 人,外周血 DOI:10.1186/s13059-016-1051- 8
37 2014 GENOME BIOL 10.1 Hypermethylation in the ZBTB20 gene is associated with major depressive disorder MeDIP-seq、RNA-seq 双胞胎人,全血 DOI:10.1186/gb-2014-15-4-r56
38 2019 Bioresour Technol 9.7
Metatranscriptomics reveals microbial adaptation and
resistance to extreme environment coupling with bioleaching performance
宏转录组 嗜酸性菌
株,微生物
DOI:10.1016/j.biortech.2019.01. 117
39 2023 Biomarker Research 9.5 Integrative multi-Omics analysis depicts the methylome and hydroxymethylome of recurrent bladder cancers and identifies biomarkers for predicting PD-L1 expression oxRRBS RRBS RNA-seq 人,膀胱
癌组织和癌旁组织
https://doi.org/10.21203/rs.3.rs- 2456805/v1
40 2022 PNAS 9.4 Mitochondrial genome undergoes de novo DNA methylation that protects mtDNA against oxidative damage during the peri-implantation window. MeDIP-seq、BS 小鼠胚胎 线粒体 DOI:10.1073/pnas.2201168119
41 2018 J
Neuroinfla mm
9.3 Necrotizing enterocolitis is associated with acute brain responses in preterm pigs. RNA-seq、qPCR 早产猪
DOI:10.1186/s12974-018-1201-
x
42 2021 Sci Total Environ 8.2 Co-occurrence of antimicrobial and metal resistance genes in pig feces and agricultural fields fertilized with slurry 宏基因组 猪粪

DOI:10.1016/j.scitotenv.2021.148259
43 2024 Cell Death & Disease 8.1 Nuclear receptor NURR1 functions to promote stemness and epithelial-mesenchymal transition in prostate cancer via its targeting of Wnt/β-catenin signaling pathway ChIP-seq分析、RNA-seq 前列腺上皮/癌细胞系 DOI:10.1038/s41419-024-06621-w
44 2012 Am J Hum Genet 8.1 Large-scale gene-centric meta-analysis across 32 studies identifies multiple lipid loci 基因组、IBC 人,全血 DOI:10.1016/j.ajhg.2012.08.032
45 2011 Am J Hum Genet 8.1
Meta-analysis of Dense Genecentric Association Studies
Reveals Common and Uncommon Variants Associated with Height
基因组、IBC DOI:10.1016/j.ajhg.2010.11.007
46 2022 CHEMOSPH ERE 8.1 Longitudinal physiological and transcriptomic analyses reveal the short term and long term response of Synechocystis sp. PCC6803 to cadmium stress 原核转录组 聚囊藻
PCC6803
DOI:10.1016/j.chemosphere.2022. 134727
47 2023 CHEMOSPH ERE 8.1
Effects of single and combined contamination of total
petroleum hydrocarbons and heavy metals on soil microecosystems: Insights into bacterial diversity, assembly, and ecological function
16sRNA 土壤 doi: 10.1016/j.chemosphere.2023.1402 88
48 2014 J
Autoimmun
7.9 DNA methylation and mRNA and microRNA expression of SLE CD4þ T cells correlate with disease phenotype DNA甲基化、mRNA-seq、 microRNA-seq 人,细胞 DOI:10.1016/j.jaut.2014.07.002
49 2021 Clin Transl Med 7.9 An epigenomic landscape of cervical intraepithelial neoplasia and cervical cancer using single-base resolution methylome and hydroxymethylome WGBS-seq、oxWGBS-seq
、RNA-seq
人,宫颈组织 DOI:10.1002/ctm2.498
50 2014 Neurology 7.7 TUBB4A de novo mutations cause isolated hypomyelination 全外显子组测序 人,血液 DOI:10.1212/WNL.0000000000 000754
51 2023 Cell Reports 7.5 A bacteriocyte symbiont determines whitefly sex ratio by regulating mitochondrial function ChIP-seq 烟粉虱 doi:10.1016/j.celrep.2023.1121 02.
52 2024 Cell Reports 7.5 MOF-mediated acetylation of UHRF1 enhances UHRF1 E3 ligase activity to facilitate DNA methylation maintenance RRBS 细胞 DOI:10.1016/j.celrep.2024.113908
53 2025 Analytical Chemistry 6.7 Fragment-specific Quantification of 5hmC by qPCR via a Combination of Enzymatic Digestion and Deamination: Extreme Specificity, High Sensitivity, and Clinical Applicability ACE-seq、Target-BS doi:10.1021/acs.analchem.4c05147
54 2024 J Genet Genomics 6.6 The transgenerational effects of maternal low-protein diet during lactation on offspring scRRBS、Smart-seq2 小鼠 DOI:10.1016/j.jgg.2024.04.008
55 2020 J Genet Genomics 6.6
Longitudinal epitranscriptome profiling reveals the crucial
role of N6-methyladenosine methylation in porcine prenatal skeletal muscle development
MeRIP-seq、 RNA-seq、IGF2BP1 RIP-seq 猪,组织 https://doi.org/10.1016/j.jgg.2020. 07.003
56 2023 Plant Physiol 6.5 MADS-box protein PpDAM6 regulates chilling requirement-mediated dormancy and bud break in peach ChIP-seq DOI:10.1093/plphys/kiad291
57 2023 MOL THER- NUCL ACIDS 6.5
Epigenetic Inactivation of SOX30 Is Associated with Male
Infertility and Offers a Therapy Target for Non-obstructive Azoospermia
WGBS 小鼠睾丸组织 doi: 10.1016/j.omtn.2019.10.038
58 2023 Plant Physiol 6.5 RNA m6A modification facilitates DNA methylation during maize kernel development BS-seq、MeRIP-seq 玉米 DOI:10.1093/plphys/kiad625
59 2024 Int J Cancer 6.4 Glucocorticoid promotes metastasis of colorectal cancer via co-regulation of glucocorticoid receptor and TET2 ChIP-seq、Co-IP、RNA-seq 细胞 DOI:10.1002/ijc.35285
60 2024 J Anim Sci Biotechnol 6.3 Effects of maternal methyl donor intake during pregnancy on ileum methylation and function in an intrauterine growth restriction pig model RRBS 仔猪 DOI:10.1186/s40104-023- 00970-w
61 2023 J Anim Sci Biotechnol 6.3
Whole-genome transcriptome and DNA methylation
dynamics of pre-implantation embryos reveal progression of embryonic genome activation in buffaloes
scWGBS+scRNA-seq 水牛 DOI:10.1186/s40104-023- 00894-5
62 2022 J Anim Sci Biotechnol 6.3
Coordinated transcriptional and post-transcriptional
epigenetic regulation during skeletal muscle development and growth in pigs
WGBS、MeRIP-seq 仔猪 DOI:10.1186/s40104-022- 00791-3
63 2023 Cell Mol Life Sci 6.2
Single-cell multi-omics profiling reveals key regulatory
mechanisms that poise germinal vesicle oocytes for maturation in pigs.
scWGBS+Smart-seq2 母猪卵母细胞 DOI:10.1007/s00018-023-04873-x
64 2024 Cell Mol Life Sci 6.2
CRL4DCAF13 E3 ubiquitin ligase targets MeCP2 for
degradation to prevent DNA hypermethylation and ensure normal transcription in growing oocytes
微量WGBS、RNA-seq 小鼠胚胎 doi: 10.1007/s00018-024-05185-4
65 2020 ECOTOX ENVIRON SAFE 6.2 Effects of co-contamination of heavy metals and total petroleum hydrocarbons on soil bacterial community and function network reconstitution 16S rRNA、ICP 土壤 DOI:10.1016/j.ecoenv.2020.111 083
66 2017 Pain 5.9 Genome-wide methylation analysis of a large population sample shows neurological pathways involvement in chronic widespread musculoskeletal pain MeDIP-seq 人,全血 DOI:10.1097/j.pain.0000000000 000880
67 2020 Front Immunol 5.7 Effects of Low-Dose Antibiotics on Gut Immunity and Antibiotic Resistomes in Weaned Piglets RNA-seq、宏基因组、 ELISA 仔猪 DOI:10.3389/fimmu.2020.00903
68 2020 Front Immunol 5.7
Rapid Gut Adaptation to Preterm Birth Involves Feeding-
Related DNA Methylation Reprogramming of Intestinal Genes in Pigs
RRBS、RNA-seq、扩增子测序(16S rRNA) 仔猪,肠组织 DOI:10.3389/fimmu.2020.00565
69 2020 Front Immunol 5.7 Postnatal Gut Immunity and Microbiota Development Is Minimally Affected by Prenatal Inflammation in Preterm Pigs 转录组、宏基因组 仔猪 DOI:10.3389/fimmu.2020.00420
70 2012 J Invest Dermatol 5.7 Array Comparative Genomic Hybridization of Keratoacanthomas and Squamous Cell Carcinomas: Different Patterns of Genetic Aberrations Suggest Two Distinct Entities 基因组CGH 分析 人,SCC病变组织 DOI:10.1038/jid.2012.104
71 2020 Mol Ecol Resour 5.5 Giant African snail genomes provide insights into molluscan whole-genome duplication and aquatic–terrestrial transition 基因组 非洲大非洲蜗牛 DOI:10.1111/1755-0998.13261
72 2021 Cell Biol Toxicol 5.3 Sevoflurane impairs m6A-mediated mRNA translation and leads to fine motor and cognitive deficits MeRIP-seq、RIP 小鼠 DOI:10.1007/s10565-021- 09601-4
73 2024 J Cell Mol Med 5.3 Epigenomic Landscape of Human Cumulus Cells in Premature Ovarian Insufficiency Using Single-Base Resolution Methylome and Hydroxymethylome 微量WGBS、ACE-seq、Target-BS、Smart-seq2 人卵丘细胞 doi: 10.1111/jcmm.70284
74 2021 J Cell Mol Med 5.3 Exosome-derived long non-coding RNA ADAMTS9-AS2 suppresses progression of oral submucous fibrosis via AKT signalling pathway Target-BS 细胞 DOI:10.1111/jcmm.16219
75 2023 Plant Science 5.2 AtSAMS regulates floral organ development by DNA methylation and ethylene signaling pathway WGBS、RNA-seq 拟南芥 doi:10.1016/j.plantsci.2023.111767
76 2021 communica
tions biology
5.2
Comparative multi-omics analyses reveal differential
expression of key genes relevant for parasitism between non- encapsulated and encapsulated Trichinella
基因组测序、WGBS、
RNA-seq
大鼠,旋毛虫 DOI:10.1038/s42003-021- 01650-z
77 2024 Cells 5.1 N6-Methyladenosine RNA Modification Regulates the Differential Muscle Development in Large White and Ningxiang Pigs MeRIP-seq、RNA-seq 猪 肌肉 DOI:10.3390/cells13201744
78 2019 Mol Oncol 5
A 17 gene panel for non-small-cell lung cancer prognosis
identified through integrative epigenomic-transcriptomic analyses of hypoxia-induced epithelial-mesenchymal transition
MeDIP-seq、hMeDIP-seq
、ChIP-seq、RNA-seq
人,细胞 DOI:10.1002/1878-0261.12491
79 2016 J CLIN ENDOCR METAB 5 Contribution of Heritability and Epigenetic Factors to Skeletal Muscle Mass Variation in United Kingdom Twins MeDIP-seq 人,全血 DOI:10.1210/jc.2016-1219
80 2019 Biol Conserv 4.9 Epigenetic and transcriptional signatures of ex situ conserved golden snub-nosed monkeys (Rhinopithecus roxellana) RRBS、RNA-seq 金丝猴,粪便 https://doi.org/10.1016/j.biocon.2 019.06.021
81 2015 Clin Epigenetics 4.8 Global analysis of DNA methylation in hepatocellular carcinoma by a liquid hybridization capture-based bisulfite sequencing approach 靶向LHC-BS、RNA-seq 人,组织 DOI:10.1186/s13148-015-0121- 1
82 2018 Clin Epigenetics 4.8 Integrated analyses of multi-omics reveal global patterns of methylation and hydroxymethylation and screen the tumor suppressive roles of HADHB in colorectal cancer MeDIP-seq、hMeDIP-seq
、RNA-seq
人,组织 DOI:10.1186/s13148-018-0458- 3
83 2023 Clin Epigenetics 4.8 Clinical characteristics and prognostic significance of DNA methylation regulatory gene mutations in acute myeloid leukemia WGBS分析及联合分析 小鼠 DOI:10.1186/s13148-023-01474-0
84 2024 Virology Journal  4.8 Vpr driving DNA methylation variation of CD4 + T cells in HIV-1 infection WGBS 人,外周血 doi:10.1186/s12985-024-02363-5
85 2019 J Nutr Biochem 4.8
Inter-correlated gut microbiota and SCFAs changes upon
antibiotics exposure links with rapid body-mass gain in weaned piglet model
16S rRNA扩增子测序、 RNA-seq、靶向代谢组 仔猪,粪便 DOI:10.1016/j.jnutbio.2019.108 246
86 2021 Front Cell Dev Biol 4.6
Comparative Epigenomics Reveals Host Diversity of the
Trichinella Epigenomes and Their Effects on Differential Parasitism
全基因组测序、WGBS、
RNA-seq
大鼠,旋毛虫 DOI:10.3389/fcell.2021.681839
87 2024 Andrology 4.5 Methylation of eNOS in the rat penile corpus cavernosum under different pathological states and its relationship with erectile function Target-BS 雄性大鼠海绵体组织 DOI:10.1111/andr.13465
88 2023 Plants 4.5 SDG26 Is Involved in Trichome Control in Arabidopsis thaliana: Affecting Phytohormones and Adjusting Accumulation of H3K27me3 on Genes Related to Trichome Growth and Development ChIP-seq 拟南芥 DOI:10.3390/plants12081651
89 2019 J Oncol 4.5 Long Non-Coding RNA Expression Profile Associated with Malignant Progression of Oral Submucous Fibrosis lncRNA-seq  OSCC/OSF /正常口腔粘膜组织 DOI:10.1155/2019/6835176
90 2023 Journal of Inflammation Research 4.5 Integrated DNA Methylation and Transcriptomics Analyses of Lacrimal Glands Identify the Potential Genes Implicated in the Development of Sjögren's Syndrome-Related Dry Eye RRBS、RNA-seq 小鼠 泪腺 DOI:10.2147/JIR.S440263
91 2020 FASEB J 4.4 Prenatal inflammation suppresses blood Th1 polarization and gene clusters related to cellular energy metabolism in preterm newborns 代谢组、全转录组、qPCR
、ELISA
猪模型,血液 DOI:10.1096/fj.201902629R
92 2021 Eye and Vision volume 4.2 Intravitreal brimonidine inhibits form-deprivation myopia in guinea pigs RNA-seq 雄性豚鼠 doi:10.1186/s40662-021-00248-0
93 2024 Front Plant Sci 4.1 Exploring the potential of Paris polyphylla var. yunnanensis pollen manipulation in modifying seed dormancy RRBS、RNA-seq 重楼花粉、种子 doi:10.3389/fpls.2024.1389357
94 2021 Front Plant Sci 4.1 Root Endophytes and Ginkgo biloba Are Likely to Share and Compensate Secondary Metabolic Processes, and Potentially Exchange Genetic Information by LTR-RTs 代谢组 银杏叶 DOI:10.3389/fpls.2021.704985
95 2019 Front Plant Sci 4.1 Flavonoid Biosynthesis Is Likely More Susceptible to Elevation and Tree Age Than Other Branch Pathways Involved in Phenylpropanoid Biosynthesis in Ginkgo Leaves 转录组 银杏叶 DOI:10.3389/fpls.2019.00983
96 2012 J Biotechnol 4.1 Systematic assessment of reduced representation bisulfite sequencing to human blood samples: A promising method for large-sample-scale epigenomic studies RRBS 人,血液 DOI:10.1016/j.jbiotec.2011.06.0 34
97 2023 Front Microbiol 4 Dynamic changes of the gut microbial colonization in preterm infants with different time points after birth 16S rRNA 人(早产儿),粪便 DOI:10.3389/fmicb.2023.10784 26
98 2011 PLoS Genet 4 Genome-wide association of bipolar disorder suggests an enrichment of replicable associations in regions near genes 全基因组 SNP 基因分型、
GWAS
DOI:10.1371/journal.pgen.1002 134
99 2023 Plants-Basel 4 The Sink-Source Relationship in Cucumber (Cucumis sativus L.) Is Modulated by DNA Methylation WGBS、RNA-seq 黄瓜 DOI:10.3390/plants13010103
100 2024 Toxics 3.9 Bioreactor Expansion Affects Microbial Succession of Mixotrophic Acidophiles and Bioremediation of Cadmium-Contaminated Soils 扩增子测序 土壤 DOI:10.3390/toxics12050362
101 2024 Biomedicin es 3.9 Transcriptome-Wide N6-Methyladenosine Alternations in Pulmonary Arteries of Monocrotaline-Induced Pulmonary Arterial Hypertension in Rats and Novel Therapeutic Targets MeRIP-seq、RNA-seq 大鼠肺动脉组织 DOI:10.3390/biomedicines1202 0364
102 2021 AM J
PHYSIOL- GASTR L
3.9 Subclinical necrotizing enterocolitis-induced systemic immune suppression in neonatal preterm pigs 转录组 新生早产猪模型 DOI:10.1152/ajpgi.00408.2020
103 2024 APPL ENVIRON MICROB 3.9 Effects of Neolamarckia cadamba leaves extract on microbial community and antibiotic resistance genes in cecal contents and feces of broilers challenged with lipopolysaccharides 宏基因组 肠道内容物 DOI:10.1128/aem.01107-23
104 2018 DNA Res 3.9 Early microbial colonization affects DNA methylation of genes related to intestinal immunity and metabolism in preterm pigs RRBS、16S rRNA测序 仔猪,粪便 DOI:10.1093/dnares/dsy001
105 2024 J Dermatol Sci 3.8 IL-4-induced decrease in both the number and CTLA-4 expression of Treg impairs suppression of Th2 type inflammation in severe atopic dermatitis Target-BS 小鼠 细胞 DOI:10.1016/j.jdermsci.2024.03.007
106 2016 Scientific Reports 3.8 The promoter methylomes of monochorionic twin placentas reveal intrauterine growth restriction-specific variations in the methylation patterns LHC-BS、RT-PCR 人,胎盘组织 DOI:10.1038/srep20181
107 2016 Scientific Reports 3.8 Filtrating colorectal cancer associated genes by integrated analyses of global DNA methylation and hydroxymethylation in cancer and normal tissue HMST-seq 人,CRC样本 DOI:10.1038/srep31826
108 2016 Scientific Reports 3.8 Stochastic anomaly of methylome but persistent SRY hypermethylation in disorder of sex development in canine somatic cell nuclear transfer WGBS、WGS、MiSeq 扩增子测序、BSP、qPCR 母狗,卵母细胞 DOI:10.1038/srep31088
109 2016 Scientific Reports 3.8 Genome-wide profiles of methylation, microRNAs, and gene expression in chemoresistant breast cancer RRBS、mRNA-seq+sRNA- seq 人,乳腺癌细胞 DOI:10.1038/srep24706
110 2016 Scientific Reports 3.8 Genome-wide landscape of DNA methylomes and their relationship with mRNA and miRNA transcriptomes in oxidative and glycolytic skeletal muscles MeDIP-seq、RNA-seq 猪,组织 DOI:10.1038/srep32186
111 2016 Scientific Reports 3.8 DNA methylation landscape of fat deposits and fatty acid composition in obese and lean pigs MeDIP-seq、Q-PCR 猪,组织 DOI:10.1038/srep35063
112 2017 Stem Cells Int 3.8 Vitrification of Rhesus Macaque Mesenchymal Stem Cells and the Effects on Global Gene Expression. RNA-seq、qRT-PCR 猕猴、骨髓细胞 DOI:10.1155/2017/3893691
113 2016 Eur J Hum Genet 3.7 Lipids, obesity and gallbladder disease in women: insights from genetic studies using the cardiovascular gene-centric 50K SNP array 基因组 DOI:10.1038/ejhg.2015.63
114 2022 Vet Res 3.7
The expression level of chicken telomerase reverse
transcriptase in tumors induced by ALV-J is positively correlated with methylation and mutation of its promoter
(Target-BS) DOI:10.1186/s13567-022- 01069-2
115 2011 BMC
Genomics
3.5 High resolution profiling of human exon methylation by liquid hybridization capture-based bisulfite sequencing LHC-BS 人,外周血 DOI:10.1186/1471-2164-12-597
116 2024 BMC
Genomics
3.5 ALKBH5 regulates chicken adipogenesis by mediating LCAT mRNA stability depending on m6A modification MeRIP-seq、RNA-seq doi: 10.1186/s12864-024-10537-2
117 2013 BMC
Genomics
3.5 Double restriction-enzyme digestion improves the coverage and accuracy of genome-wide CpG methylation profiling by reduced representation bisulfite sequencing RRBS、dRRBS 细胞 DOI:10.1186/1471-2164-14-11
118 2014 BMC
Genomics
3.5 Marked methylation changes in intestinal genes during the perinatal period of preterm neonates RRBS 猪,肠组织 DOI:10.1186/1471-2164-15-716
119 2009 BMC
Genomics
3.5
An Improved Method for Genome Wide DNA Methylation
Profiling Correlated to Transcription and Genomic Instability in Two Breast Cancer Cell Lines
MMSDK甲基化测序 人,细胞 DOI:10.1186/1471-2164-10-223
120 2023 BMC
Genomics
3.5 Identification and validation of a DNA methylation-driven gene-based prognostic model for clear cell renal cell carcinoma RRBS 肾透明细胞癌组织 DNA提取物 doi:10.1186/s12864-023- 09416-z
121 2011 Mol Cell Biochem 3.5
Regulation of cytokine expression in murine macrophages
stimulated by excretory/secretory products from Trichinella spiralis in vitro
宏基因组 螺旋锥
虫,排泄物
DOI:10.1007/s11010-011-1046- 4
122 2014 Genomics 3.4 Direct ChIP-bisulfite sequencing reveals a role of H3K27me3 mediating aberrant hypermethylation of promoter CpG islands in cancer cells ChIP-BS-seq、ChIP-seq、 RNA-seq 人,细胞 DOI:10.1016/j.ygeno.2013.12.00 6
123 2023 Heliyon 3.4 N6-methyladenosine modification contributes to respiratory syncytial virus infection MeRIP、RNA-seq 人细胞 DOI:10.1016/j.heliyon.2023.e15307
124 2025 Genomics 3.4 Comparative effects of arecoline, caffeine, and nicotine on transcription level in the nucleus accumbens of mice smart-seq2 小鼠 DOI:10.1016/j.ygeno.2025.110986
125 2021 Mol Med Rep 3.4 De novo assembly and transcriptome characterization: Novel insights into the mechanisms of primary ovarian cancer in Microtus fortis RNA-seq 东方田鼠 DOI:10.3892/mmr.2021.12580
126 2022 Pathogens 3.3 Intestinal and Mucosal Microbiome Response to Oral Challenge of Enterotoxigenic Escherichia coli in Weaned Pigs 非靶蛋白质组学和16S扩增子测序 断奶猪 DOI:10.3390/pathogens110201 60
127 2024 Forensic Sci Int Genet 3.2 DNA methylation-based age estimation from semen: Genome-wide marker identification and model development dRRBS 人 精子 DOI:10.1016/j.fsigen.2024.103215
128 2018 Frontiers in physiology 3.2 The Use of Targeted Next Generation Sequencing to Explore Candidate Regulators of TGF-β1's Impact on Kidney Cells MeDIP-seq、miRNA-seq、 RNA-seq、ChIP-Seq 小鼠,细胞 DOI:10.3389/fphys.2018.01755
129 2014 Frontiers in physiology 3.2 Trichinella spiralis, potential model nematode for epigenetics and its implication in metazoan parasitism DNA甲基化 小鼠,螺旋旋毛虫 DOI:10.3389/fphys.2013.00410
130 2021 Pediatr Res 3.1 Blood transcriptomic markers of necrotizing enterocolitis in preterm pigs. 转录组 早产仔猪
模型,全血
DOI:10.1038/s41390-021- 01605-4
131 2015 Hum Mol Genet 3.1
Mutation in mitochondrial ribosomal protein S7 (MRPS7)
causes congenital sensorineural deafness, progressive hepatic and renal failure and lactic acidemia
WES、线粒体12S rRNA、 16S rRNA DOI:10.1093/hmg/ddu747
132 2015 J
PHARMACE UT BIOMED
3.1 A transcription/translation-based gene signature predicts resistance to chemotherapy in breast cancer 细胞 doi:10.1016/j.jpba.2014.10.018
133 2013 Epigenomic s 3
Hydroxymethylation- and methylation-sensitive tag
sequencing: how will this technology change clinical applications of DNA methylation profiling?
HMST-seq DOI:10.2217/epi.13.33
134 2018 Epigenomic s 3 Diet-dependent changes in the intestinal DNA methylome after introduction of enteral feeding in preterm pigs RRBS、qPCR 猪,粪便 DOI:10.2217/epi-2017-0122
135 2015 Epigenomic s 3
Improved tagmentation-based whole-genome bisulfite
sequencing for input DNA from less than 100 mammalian cells
Micro-WGBS 水稻/猕猴,细胞 DOI:10.2217/epi.14.76
136 2021 J Neurosci Res 2.9 Epitranscriptomic m6A regulation following spinal cord injury MeRIP-seq、RNA-seq、 qRT-PCR 斑马鱼/小鼠,细胞 DOI:10.1002/jnr.24763
137 2013 Epigenetics 2.9
Integrated detection of both 5-mC and 5-hmC by high-
throughput tag sequencing technology highlights methylation reprogramming of bivalent genes during cellular
HMST-seq 人,细胞 DOI:10.4161/epi.24280
138 2013 PLoS ONE 2.9 Sorafenib Inhibits Epithelial-Mesenchymal Transition through an Epigenetic-Based Mechanism in Human Lung Epithelial Cells ChIP-seq、ChIP-qPCR 人,细胞 DOI:10.1371/journal.pone.0064 954
139 2011 PLoS ONE 2.9 A Systematic Analysis on DNA Methylation and the Expression of Both mRNA and microRNA in Bladder Cancer MMSDK甲基化测序、转录组 人,组织 DOI:10.1371/journal.pone.0028 223
140 2011 PLoS ONE 2.9 Comparison of Gene Expression and Genome-Wide DNA Methylation Profiling between Phenotypically Normal Cloned Pigs and Conventionally Bred Controls MMSDK甲基化、转录组
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DOI:10.1371/journal.pone.0025 901
141 2021 PLoS ONE 2.9 Millet-based supplement restored gut microbial diversity of acute malnourished pigs 16S rRNA DOI:10.1371/journal.pone.0250 423
142 2016 CLIN GENET 2.9 Utility of next-generation sequencing technologies for the efficient genetic resolution of haematological disorders WES 人,血液 DOI:10.1111/cge.12573
143 2022 Neuroscien ce 2.9 Epitranscriptomic Analysis of N6-methyladenosine in Infant Rhesus Macaques after Multiple Sevoflurane Anesthesia MeRIP-seq 猕猴 DOI:10.1016/j.neuroscience.202 1.11.030
144 2020 BMC
Bioinformat ics
2.9 AllEnricher: a comprehensive gene set function enrichment tool for both model and non-model species 分析工具 AllEnricher
DOI:10.1186/s12859-020-3408-
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145 2020 BMC
Genetics
2.9 Multi-omics profiling highlights lipid metabolism alterations in pigs fed low-dose antibiotics LHC-BS、RNA-seq、脂质组分析 DOI:10.1186/s12863-020- 00918-3
146 2013 BMC
Genetics
2.9 High-throughput sequencing of methylated cytosine enriched by modification-dependent restriction endonuclease MspJI MspJI-seq 拟南芥 DOI:10.1186/1471-2156-14-56
147 2024 Front Genet 208.0 Regulatory role of N6-Methyladenosine on skeletal muscle development in Hu sheep MeIP-seq 绵羊组织 DOI:10.3389/fgene.2024.1449144
148 2021 Front Genet 2.8 Diet-Dependent Changes of the DNA Methylome Using a Gö ttingen Minipig Model for Obesity LHC-BS、代谢组 哥廷根小型猪模型 DOI:10.3389/fgene.2021.63285 9
149 2023 Front Genet 2.8
Unidirectional alteration of methylation and
hydroxymethylation at the promoters and differential gene expression in oral squamous cell carcinoma
oxWGBS+WGBS 人,细胞 DOI:10.3389/fgene.2023.12690 84
150 2021 Front Genet 2.8
Genome-wide DNA Methylation and
HydroxymethylationChanges Revealed Epigenetic Regulation ofNeuromodulation and Myelination in Yak Hypothalamus
oxRRBS+RRBS 牦牛,组织 DOI:10.3389/fgene.2021.59213 5
151 2022 Genes 2.8 Effect of Humantenine on mRNA m6A Modification and Expression in Human Colon Cancer Cell Line HCT116 MeRIP-seq、 RNA-seq 人/线虫 https://doi.org/10.3390/genes1 3050781
152 2023 CURR
ISSUES MOL BIOL
2.8 Analysis of DNA Methylation Differences during the JIII Formation of Bursaphelenchus xylophilus WGBS、RNA-seq 线虫 doi:10.3390/cimb45120603
153 2023 Animals 2.7 Deciphering Cellular Heterogeneity and Communication Patterns in Porcine Antral Follicles by Single-Cell RNA Sequencing smart-seq2 猪窦卵泡细胞 doi.org/10.3390/ani13193019
154 2015 NEUROMUS
CULAR DISORD
2.7 Delayed diagnosis of congenital myasthenia due to associated mitochondrial enzyme defect WES、Sanger测序 DOI:10.1016/j.nmd.2014.11.017
155 2015 TECHNOL
CANCER RES T
2.7 Clustering of Cancer Cell Lines Using A Promoter-Targeted Liquid Hybridization Capture-Based Bisulfite Sequencing Approach LHC-BS 人,细胞系 DOI:10.1177/153303461450041 6
156 2023 BMC Oral Health 2.6 Low-dose arecoline regulates distinct core signaling pathways in oral submucous fibrosis and oral squamous cell carcinoma dRRBS 细胞 DOI:10.1186/s12903-023-02887-2
157 2013 BIOCHEM
BIOPH RES CO
2.5 Identification of FAM96B as a novel prelamin A binding partner 免疫共沉淀和GST pull down 人,组织 DOI:10.1016/j.bbrc.2013.08.099
158 2015 Res Microbiol 2.5 Comparative metagenomics reveals microbial community differentiation in a biological heap leaching system 宏基因组 矿石 DOI:10.1016/j.resmic.2015.06.0 05
159 2018 Mol Genet Genomics 2.3 Genome-wide DNA methylation analysis in jejunum of Sus scrofa with intrauterine growth restriction RRBS、Hiseq-BSP 仔猪,组织 DOI:10.1007/s00438-018-1422- 9
160 2021 Hereditas 2.1 Regulation of DNA methylation on key parasitism genes of Cysticercus cellulosae revealed by integrative epigenomic- transcriptomic analyses WGBS、RNA-seq 囊尾蚴 DOI:10.1186/s41065-021- 00195-9
161 2015 BMC
Medical Genomics
2.1 An atypical form of AOA2 with myoclonus associated with mutations in SETX and AFG3L2 外显子组测序 DOI:10.1186/s12881-015-0159- 0
162 2018 Anim Genet 1.8 Identification of the mutation causing progressive retinal atrophy in Old Danish Pointing Dog. 全基因组测序 DOI:10.1111/age.12659
163 2012 Parasitol Res 1.8 Inhibition of mammalian muscle differentiation by excretory secretory products of muscle larvae of Trichinella spiralis in vitro 代谢组 螺旋旋毛
虫,分泌物
DOI:10.1007/s00436-011-2789- 2
164 2020 Exp Parasitol 1.4 A longitudinal study reveals the alterations of the Microtus fortis colonic microbiota during the natural resistance to Schistosoma japonicum infection 16S rRNA 小鼠,排泄物 DOI:10.1016/j.exppara.2020.10 8030
165 2011 Cell Reprogram 1.2 DNA Methylation in Peripheral Blood Cells of Pigs Cloned by Somatic Cell Nuclear Transfer DNA甲基化 猪,外周血细胞 DOI:10.1089/cell.2010.0099
166 2017 TRANSPL P 0.8
Changes in DNA Methylation of Glucocorticoid-Induced
Tumor Necrosis Factor Receptor and Its Ligand in Liver Transplantation
焦磷酸测序 人,血液 DOI:10.1016/j.transproceed.201 7.06.023